(A) 
An application for a Marine Conservation and Regulation of Marine Structures permit shall include payment of an initial minimum non-refundable fee in addition to a sum based upon the estimated costs of construction, dredging, and/or deposition of material, as follows:
(1) 
For residential uses the minimum fee shall be one hundred ($100) dollars.
(2) 
For nonresidential uses the minimum fee shall be five hundred ($500) dollars.
(3) 
In addition to the minimum fee, a fee of seven ($7) dollars shall be charged for each one thousand ($1,000) dollars of estimated costs of construction costs, dredging and/or costs of deposition of material, or fraction thereof.
(B) 
For the purposes of this section, the estimated costs of construction, dredging and/or deposition of material shall be prepared by a professional engineer licensed by the State of New York and be submitted to the Department of Engineering Services in writing as part of the application for a Marine Conservation and Regulation of Marine Structures permit set forth in Article V and Article VI of this chapter.
The non-refundable application fee for filing an appeal pursuant to § 137-34(C)(3) of this chapter shall be two hundred ($200) dollars. No appeal from a denial of a permit for the construction and reconstruction of marine structures authorized by § 137-34(C)(3) shall be processed until the non-refundable application fee has been paid to the Department of Engineering Services.